Publications

2021
Jin Wang, Preeti Singh, Kanhua Yin, Jingan Zhou, Yujia Bao, Menghua Wu, Kush Pathak, Sophia K McKinley, Danielle Braun, and Kevin S Hughes. 2021. “Disease spectrum of breast cancer susceptibility genes.” Frontiers in Oncology, 11.
Sophia K McKinley, Preeti Singh, Kanhua Yin, Jin Wang, Jingan Zhou, Yujia Bao, Menghua Wu, Kush Pathak, John T Mullen, Danielle Braun, and others. 2021. “Disease spectrum of gastric cancer susceptibility genes.” Medical Oncology, 38, 5, Pp. 1–10.
Theodore Huang, Gregory Idos, Christine Hong, Stephen Gruber, Giovanni Parmigiani, and Danielle Braun. 2021. “Extending Models Via Gradient Boosting: An Application to Mendelian Models.” arXiv preprint arXiv:2105.06559.
Kinyas Kartal, Zoe Guan, Rong Tang, Molly Griffin, Yan Wang, Danielle Braun, Alison P Klein, and Kevin S Hughes. 2021. “Familial pancreatic cancer: who should be considered for genetic testing?” Irish Journal of Medical Science (1971-), Pp. 1–10.
Yunqi Yang, Christine Hong, Jane W Liang, Stephen Gruber, Giovanni Parmigiani, Gregory Idos, and Danielle Braun. 2021. “A likelihood-based approach to assessing frequency of pathogenicity among variants of unknown significance in susceptibility genes.” Statistics in Medicine, 40, 3, Pp. 593–606.
Gavin Lee, Jane W Liang, Qing Zhang, Theodore Huang, Christine Choirat, Giovanni Parmigani, and Danielle Braun. 2021. “Multi-syndrome, multi-gene risk modeling for individuals with a family history of cancer with the novel R package PanelPRO.” Elife, 10, Pp. e68699.
Jingan Zhou, Preeti Singh, Kanhua Yin, Jin Wang, Yujia Bao, Menghua Wu, Kush Pathak, Sophia K McKinley, Danielle Braun, Carrie C Lubitz, and others. 2021. “Non-medullary thyroid cancer susceptibility genes: evidence and disease spectrum.” Annals of Surgical Oncology, Pp. 1–11.
Zoe Guan, Giovanni Parmigiani, Danielle Braun, and Lorenzo Trippa. 2021. “Prediction of Hereditary Cancers Using Neural Networks.” Annals of Applied Statistics.
Kanhua Yin, Jingan Zhou, Preeti Singh, Jin Wang, Danielle Braun, Kevin S Hughes, and others. 2021. “Search Behavior Regarding Cancer Susceptibility Genes Using a Clinical Decision Support Tool for Gene-Specific Penetrance: Content Analysis.” JMIR cancer, 7, 3, Pp. e28527.
Theodore Huang, Matthew Ploenzke, and Danielle Braun. 2021. “SNIP: An Adaptation of Sorted Neighborhood Methods for Deduplicating Pedigree Data.” arXiv preprint arXiv:2108.08773.
Margaux LA Hujoel, Giovanni Parmigiani, and Danielle Braun. 2021. “Statistical approaches for meta-analysis of genetic mutation prevalence.” Genetic Epidemiology, 45, 2, Pp. 154–170.
Theodore Huang, Danielle Braun, Henry T Lynch, and Giovanni Parmigiani. 2021. “Variation in cancer risk among families with genetic susceptibility.” Genetic epidemiology, 45, 2, Pp. 209–221.
2020
Jaihwan Kim, Danielle Braun, Chinedu Ukaegbu, Tara G Dhingra, Fay Kastrinos, Giovanni Parmigiani, Sapna Syngal, and Matthew B Yurgelun. 2020. “Clinical factors associated with gastric cancer in individuals with Lynch syndrome.” Clinical Gastroenterology and Hepatology, 18, 4, Pp. 830–837.
Zoe Guan, Theodore Huang, Anne Marie McCarthy, Kevin S Hughes, Alan Semine, Hajime Uno, Lorenzo Trippa, Giovanni Parmigiani, and Danielle Braun. 2020. “Combining Breast Cancer Risk Prediction Models.” arXiv preprint arXiv:2008.01019.
Kanhua Yin, Yuxi Liu, Basanta Lamichhane, John F Sandbach, Gayle Patel, Gia Compagnoni, Richard H Kanak, Barry Rosen, David P Ondrula, Linda Smith, and others. 2020. “Legacy Genetic Testing Results for Cancer Susceptibility: How Common are Conflicting Classifications in a Large Variant Dataset from Multiple Practices?” Annals of surgical oncology, 27, 7, Pp. 2212–2220.
K Yin, Y Liu, B Lamichhane, JF Sandbach, G Patel, G Compagnoni, RH Kanak, B Rosen, DP Ondrula, L Smith, and others. 2020. “Legacy Genetic Testing Results for Cancer Susceptibility: How Common are Conflicting Classifications in a Large Variant Dataset from Multiple Practices?” Annals of Surgical Oncology.
Gavin Lee, Qing Zhang, Jane W Liang, Theodore Huang, Christine Choirat, Giovanni Parmigiani, and Danielle Braun. 2020. “PanelPRO: AR package for multi-syndrome, multi-gene risk modeling for individuals with a family history of cancer.” arXiv preprint arXiv:2010.13011.
Fan Gao, Xuedong Pan, Elissa B Dodd-Eaton, Carlos Vera Recio, Matthew D Montierth, Jasmina Bojadzieva, Phuong L Mai, Kristin Zelley, Valen E Johnson, Danielle Braun, and others. 2020. “A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome.” Genome research, 30, 8, Pp. 1170–1180.
Fan Gao, Xuedong Pan, Elissa B Dodd-Eaton, Carlos Vera C Recio, Jasmina Bojadzieva, Phuong L Mai, Kristin Zelley, Valen E Johnson, Danielle Braun, Kim E Nichols, and others. 2020. “A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome.” bioRxiv.
Jinbo Chen, Eunchan Bae, Lingjiao Zhang, Kevin Hughes, Giovanni Parmigiani, Danielle Braun, and Timothy R Rebbeck. 2020. “Penetrance of Breast and Ovarian Cancer in Women Who Carry a BRCA1/2 Mutation and Do Not Use Risk-Reducing Salpingo-Oophorectomy: An Updated Meta-Analysis.” JNCI cancer spectrum, 4, 4, Pp. pkaa029.

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