Publications

2017
Jessica A Cintolo-Gonzalez, Danielle Braun, Amanda L Blackford, Emanuele Mazzola, Ahmet Acar, Jennifer K Plichta, Molly Griffin, and Kevin S Hughes. 2017. “Breast cancer risk models: a comprehensive overview of existing models, validation, and clinical applications.” Breast Cancer Research and Treatment, Pp. 1–22.
Danielle Braun, Malka Gorfine, Hormuzd A Katki, Argyrios Ziogas, and Giovanni Parmigiani. 2017. “Nonparametric Adjustment for Measurement Error in Time to Event Data: Application to Risk Prediction Models.” Journal of the American Statistical Association, just-accepted.
Emanuele Mazzola, Suzanne B Coopey, Molly Griffin, Fernanda Polubriaginof, Julliette M Buckley, Giovanni Parmigiani, Judy E Garber, Barbara L Smith, Michele A Gadd, Michelle C Specht, and others. 2017. “Reassessing risk models for atypical hyperplasia: age may not matter.” Breast Cancer Research and Treatment, Pp. 1–7.
J Chipman and D Braun. 2017. “Simpson's paradox in the integrated discrimination improvement.” Statistics in medicine, 36, 28, Pp. 4468–4481.
2016
Monica Marabelli, Su-Chun Cheng, and Giovanni Parmigiani. 2016. “Penetrance of ATM Gene Mutations in Breast Cancer: A Meta-Analysis of Different Measures of Risk.” Genetic epidemiology, 40, 5, Pp. 425–431.
Swati Biswas, Philamer Atienza, Jonathan Chipman, Amanda L Blackford, Banu Arun, Kevin Hughes, and Giovanni Parmigiani. 2016. “A two-stage approach to genetic risk assessment in primary care.” Breast cancer research and treatment, 155, 2, Pp. 375–383.
2015
Emanuele Mazzola, Amanda Blackford, Giovanni Parmigiani, and Swati Biswas. 2015. “Recent enhancements to the genetic risk prediction model BRCAPRO.” Cancer informatics, 14, Suppl 2, Pp. 147.
2014
Malka Gorfine, Li Hsu, David M Zucker, and Giovanni Parmigiani. 2014. “Calibrated predictions for multivariate competing risks models.” Lifetime data analysis, 20, 2, Pp. 234–251.
Danielle Braun, Malka Gorfine, Hormuzd A Katki, Argyrios Ziogas, Hoda Anton-Culver, and Giovanni Parmigiani. 2014. “Extending mendelian risk prediction models to handle misreported family history”.
Danielle Braun, Malka Gorfine, and Giovanni Parmigiani. 2014. “Misreported family histories and underestimation of risk.” Journal of Clinical Oncology, 32, 32, Pp. 3682–3683.
Emanuele Mazzola, Jonathan Chipman, Su-Chun Cheng, and Giovanni Parmigiani. 2014. “Recent BRCAPRO upgrades significantly improve calibration.” Cancer Epidemiology and Prevention Biomarkers, 23, 8, Pp. 1689–1695.
Swati Biswas, Banu Arun, and Giovanni Parmigiani. 2014. “Reclassification of predictions for uncovering subgroup specific improvement.” Statistics in medicine, 33, 11, Pp. 1914–1927.
2013
Malka Gorfine*, Li Hsu*, and Giovanni Parmigiani. 2013. “Frailty models for familial risk with application to breast cancer.” Journal of the American Statistical Association, 108, 504, Pp. 1205–1215.
Emanuele Mazzola, Su-Chun Cheng, and Giovanni Parmigiani. 2013. “The penetrance of ductal carcinoma in situ among BRCA1 and BRCA2 mutation carriers.” Breast cancer research and treatment, 137, 1, Pp. 315–318.
Jonathan Chipman, Brian Drohan, Amanda Blackford, Giovanni Parmigiani, Kevin Hughes, and Phil Bosinoff. 2013. “Providing access to risk prediction tools via the HL7 XML-formatted risk web service.” Breast cancer research and treatment, 140, 1, Pp. 187–193.
Swati Biswas, Philamer Atienza, Jonathan Chipman, Kevin Hughes, Angelica Gutierrez M Barrera, Christopher I Amos, Banu Arun, and Giovanni Parmigiani. 2013. “Simplifying clinical use of the genetic risk prediction model BRCAPRO.” Breast cancer research and treatment, 139, 2, Pp. 571–579.
2012
Swati Biswas, Neelam Tankhiwale, Amanda Blackford, Angelica Gutierrez M Barrera, Kaylene Ready, Karen Lu, Christopher I Amos, Giovanni Parmigiani, and Banu Arun. 2012. “Assessing the added value of breast tumor markers in genetic risk prediction model BRCAPRO.” Breast cancer research and treatment, 133, 1, Pp. 347–355.
Suzanne B Coopey, Emanuele Mazzola, Julliette M Buckley, John Sharko, Ahmet K Belli, Elizabeth MH Kim, Fernanda Polubriaginof, Giovanni Parmigiani, Judy E Garber, Barbara L Smith, and others. 2012. “The role of chemoprevention in modifying the risk of breast cancer in women with atypical breast lesions.” Breast cancer research and treatment, 136, 3, Pp. 627–633.
2010
M.F. Ochs, A. Blackford, and G. Parmigiani. 2010. Biomedical informatics in cancer research. Springer Verlag.
Wenyi Wang, Kristin B Niendorf, Devanshi Patel, Amanda Blackford, Fabio Marroni, Arthur J Sober, Giovanni Parmigiani, and Hensin Tsao. 2010. “Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO.” Cancer research, 70, 2, Pp. 552–559.

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