Publications

2020
Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Ellen P Grant, and Bruce Fischl. 2020. “Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years.” arXiv preprint arXiv:2001.03091.
Lin Qi, Haoran Zhang, Xuehao Cao, Xuyang Lyu, Lisheng Xu, Benqiang Yang, and Yangming Ou. 2020. “Multi-Scale Feature Fusion Convolutional Neural Network for Concurrent Segmentation of Left Ventricle and Myocardium in Cardiac MR Images.” Journal of Medical Imaging and Health Informatics, 10, 5, Pp. 1023–1032.
Sheng He, Randy L Gollub, Shawn N Murphy, Juan David Perez, Sanjay Prabhu, Rudolph Pienaar, Richard L Robertson, Ellen P Grant, and Yangming Ou. 2020. “Brain Age Estimation Using LSTM on Children's Brain MRI.” IEEE International Symposium on Biomedical Imaging (ISBI).
Xi Yu, Jennifer Zuk, Meaghan V Perdue, Ola Ozernov-Palchik, Talia Raney, Sara D Beach, Elizabeth S Norton, Yangming Ou, John DE Gabrieli, and Nadine Gaab. 2020. “Putative protective neural mechanisms in prereaders with a family history of dyslexia who subsequently develop typical reading skills.” Hum Brain Mapp.
2019
Maryse Fortin, Ines Machado, Yangming Ou, Mattias P Heinrich, Julia A Schnabel, Xia Zhong, Andreas Maier, Wolfgang Wein, Roozbeh Shams, Samuel Kadoury, and others. 2019. “Evaluation of MRI to ultrasound registration methods for brain shift correction: The CuRIOUS2018 Challenge”.
Rebecca J Weiss, Sara V Bates, Ya’nan Song, Yue Zhang, Emily M Herzberg, Yih-Chieh Chen, Maryann Gong, Isabel Chien, Lily Zhang, Shawn N Murphy, and others. 2019. “Mining multi-site clinical data to develop machine learning MRI biomarkers: application to neonatal hypoxic ischemic encephalopathy.” Journal of translational medicine, 17, 1, Pp. 1–16.
Ina K Ly, Bella Vakulenko-Lagun, Kyrre E Emblem, Yangming Ou, Xiao Da, Rebecca A Betensky, Jayashree Kalpathy-Cramer, Dan G Duda, Rakesh K Jain, Andrew S Chi, and others. 2019. “Publisher Correction: Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI.” Scientific reports, 9, 1, Pp. 1–1.
Xi Yu, Jennifer Zuk, Meaghan V Perdue, Ola Ozernov-Palchik, Talia Raney, Sara D Beach, Elizabeth S Norton, Yangming Ou, John DE Gabrieli, and Nadine Gaab. 2019. “Putative protective neural mechanisms in pre-readers with a family history of dyslexia who subsequently develop typical reading skills.” bioRxiv, Pp. 707786.
Jia-bin Huang, Enhong Zhuo, Haojiang Li, Lizhi Liu, Hongmin Cai, and Yangming Ou. 2019. “Achieving Accurate Segmentation of Nasopharyngeal Carcinoma in MR Images Through Recurrent Attention.” International Conference on Medical Image Computing and Computer-Assisted Intervention 11768, Pp. 494–502. Springer, Cham.
Inês Machado, Matthew Toews, Elizabeth George, Prashin Unadkat, Walid Essayed, Jie Luo, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, Steve Pieper, Sarah Frisken, Alexandra Golby, William 3rd M Wells, and Yangming Ou. 2019. “Deformable MRI-Ultrasound registration using correlation-based attribute matching for brain shift correction: Accuracy and generality in multi-site data.” NeuroImage, 202, Pp. 116094 (19 pages).
Yiming Xiao, Hassan Rivaz, Matthieu Chabanas, Maryse Fortin, Ines Machado, Yangming Ou, Mattias P Heinrich, Julia A Schnabel, Xia Zhong, Andreas Maier, and others. 2019. “Evaluation of MRI to ultrasound registration methods for brain shift correction: The CuRIOUS2018 Challenge.” IEEE Transactions on Medical Imaging, 39, 3, Pp. 777-786.
Sarah U. Morton, Rutvi Vyas, Borjan Gagoski, Catherine Vu, Jonathan Litt, Ryan Larsen, Matthew J Kuchan, John B Lasekan, Brad P Sutton, Ellen P Grant, and Yangming Ou. 2019. “Maternal dietary intake of omega-3 fatty acids correlates positively with regional brain volumes in 1-month-old term infants.” Cerebral Cortex, Pp. bhz222 .
Ya’nan Song, Sara V Bates, Randy L Gollub, Rebecca J Weiss, Sheng He, CJ Cobos, S Sotardi, Yue Zhang, Tonghua Liu, Ellen P Grant, and others. 2019. “Probabilistic atlases of neonatal hypoxic ischemic injury.” In Proceedings at pediatric academic society (PAS), Pp. 24–30.
2018
Christos Davatzikos, Saima Rathore, Spyridon Bakas, Sarthak Pati, Mark Bergman, Ratheesh Kalarot, Patmaa Sridharan, Aimilia Gastounioti, Nariman Jahani, Eric Cohen, and others. 2018. “Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.” Journal of medical imaging, 5, 1, Pp. 011018.
Yangming Ou, Lilla Zöllei, Xiao Da, Kallirroi Retzepi, Shawn N Murphy, Elizabeth R Gerstner, Bruce R Rosen, Ellen P Grant, Jayashree Kalpathy-Cramer, and Randy L Gollub. 2018. “Field of view normalization in multi-site brain MRI.” Neuroinformatics, 16, 3-4, Pp. 431–444.
Ina K Ly, Bella Vakulenko-Lagun, Kyrre E Emblem, Yangming Ou, Xiao Da, Rebecca A Betensky, Jayashree Kalpathy-Cramer, Dan G Duda, Rakesh K Jain, Andrew S Chi, and others. 2018. “Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI.” Scientific reports, 8, 1, Pp. 1–13.
Anna LR Pinto, Yangming Ou, Mustafa Sahin, and Ellen P Grant. 2018. “Quantitative apparent diffusion coefficient mapping may predict seizure onset in children with Sturge-Weber syndrome.” Pediatric neurology, 84, Pp. 32–38.
Mu Zhou, Jacob Scott, Baishali Chaudhury, Lawrence Hall, Dmitry Goldgof, Kristen W Yeom, Michael Iv, Yangming Ou, Jayashree Kalpathy-Cramer, Sandy Napel, and others. 2018. “Radiomics in brain tumor: image assessment, quantitative feature descriptors, and machine-learning approaches.” American Journal of Neuroradiology, 39, 2, Pp. 208–216.
Inês Machado, Matthew Toews, Jie Luo, Prashin Unadkat, Walid Essayed, Elizabeth George, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, and others. 2018. “Deformable MRI-ultrasound registration via attribute matching and mutual-saliency weighting for image-guided neurosurgery.” Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation. Springer, Cham.
2017
Arne Lauer, Xiao Da, Mikkel Bo Hansen, Gregoire Boulouis, Yangming Ou, Xuezhu Cai, Afonso Liberato Celso Pedrotti, Jayashree Kalpathy-Cramer, Paul Caruso, Douglas L Hayden, and others. 2017. “ABCD1 dysfunction alters white matter microvascular perfusion.” Brain, 140, 12, Pp. 3139–3152.

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